Bibliography
For more information or copies of journal articles, please contact info@bdmethylation.com.
Bibliography
Alcohol
Philibert
The impact of recent alcohol use on genome wide DNA methylation signatures
Philibert RA, Plume JM, Gibbons FX, Brody GH and Beach SRH (2012) The impact of recent alcohol use on genome wide DNA methylation signatures. Front. Gene. 3:54. doi: 10.3389/fgene.2012.00054
Cited over 100 times
A Review of Epigenetic Markers of Tobacco and Alcohol Consumption
Philibert R, Erwin C. A Review of Epigenetic Markers of Tobacco and Alcohol Consumption. Behav Sci Law. 2015;33(5):675‐690. doi:10.1002/bsl.2202
Philibert R, Miller S, Noel A, Dawes K, Papworth E, Black DW, Beach SRH, Long JD, Mills JA, Dogan M.
J Insur Med. 2019;48(1):90-102. doi: 10.17849/insm-48-1-1-1.1. Epub 2019 Oct 14.
AHRR methylation predicts smoking status and smoking intensity in both saliva and blood DNA.
Philibert R, Dogan M, Beach SRH, Mills JA, Long JD.
Am J Med Genet B Neuropsychiatr Genet. 2020 Jan;183(1):51-60. doi: 10.1002/ajmg.b.32760. Epub 2019 Aug 27.
Genome Wide and Digital PCR Epigenetic Assessments of Alcohol Consumption
Philibert, Robert; Dogan, Meeshanthini; Noel, Amanda; Miller, Shelly; Krukow, Brianna; Cowley, Joseph; Knudsen, April; Beach, Steven; Black, Donald W.
Genome wide and Digital PCR Epigenetic Assessments of Alcohol Consumption. American Journal of Medical Genetics
Philibert RA, Penaluna B, White T, Shires S, Gunter T, Liesveld J, Erwin C, Hollenbeck N, Osborn T. 2014.
A pilot examination of the genome-wide DNA methylation signatures of subjects entering and exiting short-term alcohol dependence treatment programs. Epigenetics 9:9:1212-1219. PMID:25147915.
Affiliated
Independent
Brückmann C, Islam SA, MacIsaac JL, Morin AM, Karle KN, Santo AD, Wüst R, Lang I, Batra A, Kobor MS, Nieratschker V. 2017.
DNA methylation signatures of chronic alcohol dependence in purified CD3+ T-cells of patients undergoing alcohol treatment
Brückmann C, Santo AD, Karle KN, Batra A, Nieratschker V. 2016. Validation of differential GDAP1 DNA methylation in alcohol dependence and its potential function as a biomarker for disease severity and therapy outcome. Epigenetics 11:6. PMID:27128683.
Smoking
Philibert
Smoking-Associated DNA Methylation Biomarkers and Their Predictive Value for All-Cause and Cardiovascular MortalityZhang Y, Schöttker B, Florath I, et al. Smoking-Associated DNA Methylation Biomarkers and Their Predictive Value for All-Cause and Cardiovascular Mortality. Environ Health Perspect. 2016;124(1):67‐74. doi:10.1289/ehp.1409020
A Quantitative Epigenetic Approach for the Assessment of Cigarette Consumption
Philibert R, Hollenbeck N, Andersen E, et al. A quantitative epigenetic approach for the assessment of cigarette consumption. Front Psychol. 2015;6:656. Published 2015 Jun 2. doi:10.3389/fpsyg.2015.00656
Validated Inference of Smoking Habits From Blood With a Finite DNA Methylation Marker Set
Maas SCE, Vidaki A, Wilson R, et al. Validated inference of smoking habits from blood with a finite DNA methylation marker set. Eur J Epidemiol. 2019;34(11):1055‐1074. doi:10.1007/s10654-019-00555-w
Reversion of AHRR Demethylation Is a Quantitative Biomarker of Smoking Cessation
Philibert R, Hollenbeck N, Andersen E, et al. Reversion of AHRR Demethylation Is a Quantitative Biomarker of Smoking Cessation. Front Psychiatry. 2016;7:55. Published 2016 Apr 6. doi:10.3389/fpsyt.2016.00055
AHRR Methylation Is a Significant Predictor of Mortality Risk in Framingham Heart Study
Philibert RA, Dogan MV, Mills JA, Long JD. AHRR Methylation is a Significant Predictor of Mortality Risk in Framingham Heart Study. J Insur Med. 2019;48(1):79‐89. doi:10.17849/insm-48-1-1-11.1
AHRR (cg05575921) Hypomethylation Marks Smoking Behaviour, Morbidity and Mortality
Bojesen SE, Timpson N, Relton C, Davey Smith G, Nordestgaard BG. AHRR (cg05575921) hypomethylation marks smoking behaviour, morbidity and mortality. Thorax. 2017;72(7):646‐653. doi:10.1136/thoraxjnl-2016-208789
Coordinated Changes in AHRR Methylation in Lymphoblasts and Pulmonary Macrophages from Smokers
Monick MM, Beach SR, Plume J, et al. Coordinated changes in AHRR methylation in lymphoblasts and pulmonary macrophages from smokers. Am J Med Genet B Neuropsychiatr Genet. 2012;159B(2):141‐151. doi:10.1002/ajmg.b.32021
Cited over 200 times
Philibert, R.A., Beach, S.R.H., Lei, M. et al. Changes in DNA methylation at the aryl hydrocarbon receptor repressor may be a new biomarker for smoking. Clin Epigenet 5, 19 (2013). https://doi.org/10.1186/1868-7083-5-19
Lei MK, Gibbons FX, Simons RL, Philibert RA, Beach SRH.
Genes (Basel). 2020 Mar 14;11(3). pii: E311. doi: 10.3390/genes11030311.
Andersen AM, Lei MK, Beach SRH, Philibert RA, Sinha S, Colgan JD.
Genes (Basel). 2020 Jan 30;11(2). pii: E149. doi: 10.3390/genes11020149.
Philibert R, Dogan M, Beach SRH, Mills JA, Long JD. AHRR methylation predicts smoking status and smoking intensity in both saliva and blood DNA. Am J Med Genet B Neuropsychiatr Genet. 2020 Jan;183(1):51-60. doi: 10.1002/ajmg.b.32760. Epub
2019 Aug 27. PubMed PMID: 31456352.
Saliva DNA Methylation Detects Nascent Smoking in Adolescents.
Dawes K, Andersen A, Vercande K, Papworth E, Philibert W, Beach SRH, Gibbons FX, Gerrard M, Philibert R.
J Child Adolesc Psychopharmacol. 2019 Aug;29(7):535-544. doi: 10.1089/cap.2018.0176. Epub 2019 Jun 10.
Robert Philibert, Meeshanthini Dogan, Amanda Noel, Shelly Miller, Brianna Krukow, Emma Papworth, Joseph Cowley, Jeffrey D. Long and Donald W. Black, University of Iowa, United States, Behavioral Diagnostics LLC, United States, Cardio Diagnostics, United States, Center for Alcohol and Drug Services, United States
Andersen AM, Philibert RA, Gibbons FX, Simons RL, Long J. Accuracy and utility of an epigenetic biomarker for smoking in populations with varying rates of false self-report. Am J Med Genet Part B. 2017; 9999:1–10.
A QUANTITATIVE EPIGENETIC APPROACH FOR THE ASSESSMENT OF CIGARETTE CONSUMPTION.
Philibert R, Hollenbeck N, Andersen E, Osborn T, Gerrard M, Gibbons FX, Wang K. 2015. A quantitative epigenetic approach for the assessment of cigarette consumption. Frontiers in Psychology 6:656. PMID:26082730
DEMETHYLATION OF THE ARYL HYDROCARBON RECEPTOR REPRESSOR AS A BIOMARKER FOR NASCENT SMOKERS.
Philibert R, Beach SR, Brody GH. 2012. Demethylation of the aryl hydrocarbon receptor repressor as a biomarker for nascent smokers. Epigenetics 7:1331-1338. PMID:23070629.
Philibert RA, Sears RA, Powers LS, Nash E, Bair T, Gerke AK, … Monick MM. 2012. Coordinated DNA methylation and gene expression changes in smoker alveolar macrophages: specific effects on VEGF receptor 1 expression. Journal of Leukocyte Biology 92(3):621–631. PMID:22427682.
COORDINATED CHANGES IN AHRR METHYLATION IN LYMPHOBLASTS AND PULMONARY MACROPHAGES FROM SMOKERS.
Monick MM, Beach SRH, Plume J, Sears R, Gerrard M, Brody GH, Philibert RA. 2012. Coordinated changes in AHRR methylation in lymphoblasts and pulmonary macrophages from smokers. American Journal of Medical Genetics 159B(2):141–151. PMID:22232023.
Philibert RA, Beach SRH, Lei MK, Brody GH. 2013. Changes in DNA methylation at the aryl hydrocarbon receptor repressor may be a new biomarker for smoking. Clinical Epigenetics 5(1):19. PMID:24120260.
Dogan MV, Shields B, Cutrona C, Gao L, Gibbons FX, Simons R, … Philibert RA. 2014. The effect of smoking on DNA methylation of peripheral blood mononuclear cells from African American women. BMC Genomics 15:151. PMID:24559495.
Affiliated
Lei MK, Gibbons FX, Simons RL, Philibert RA, Beach SRH.
Genes (Basel). 2020 Mar 14;11(3). pii: E311. doi: 10.3390/genes11030311.
Saliva DNA Methylation Detects Nascent Smoking in Adolescents.
Dawes K, Andersen A, Vercande K, Papworth E, Philibert W, Beach SRH, Gibbons FX, Gerrard M, Philibert R.
J Child Adolesc Psychopharmacol. 2019 Aug;29(7):535-544. doi: 10.1089/cap.2018.0176. Epub 2019 Jun 10.
A Droplet Digital PCR Assay for Smoking Predicts All-Cause Mortality.
Andersen AM, Ryan PT, Gibbons FX, Simons RL, Long JD, Philibert RA.
J Insur Med. 2018;47(4):220-229. doi: 10.17849/insm-47-4-1-10.1. Epub 2019 Jan 31.
Independent
Joubert BR, Håberg SE, Nilsen RM, Wang X, Vollset SE, Murphy SK, Huang Z, Hoyo C, Midttun Ø, Cupul-Uicab LA, Ueland PM, Wu MC, Nystad W, Bell DA, Peddada SD, London SJ. 2012. 450K Epigenome-Wide Scan Identifies Differential DNA Methylation in Newborns Related to Maternal…
DNA METHYLATION AS A LONG-TERM BIOMARKER OF EXPOSURE TO TOBACCO SMOKE.
Shenker NS, Ueland, PM, Polidoro S, van Veldhoven K, Ricceri F, Brown R, Flanagan JM, Vineis P, Flanagan JM. 2013. DNA Methylation as a long-term biomarker of exposure to tobacco smoke. Epidemiology 24:712-716. PMID:23867811.
Gao X, Jia M, Zhang Y, Breitling LP, Brenner H. 2015. DNA methylation changes of whole blood cells in response to active smoking exposure in adults: a systematic review of DNA methylation studies. Clinical Epigenetics 7:113. PMC4609112
Shenker NS, Polidoro S, van Veldhoven K, Sacerdote C, Ricceri F, Birrell MA, Belvisi MG, Brown R, Vineis P, Flanagan JM. 2012. Epigenome-wide association study in the European Prospective Investigation into Cancer and Nutrition (EPIC-Turin) identifies novel genetic loci associated with smoking. Human Molecular Genetics….
All-Cause Mortality
Philibert
AHRR Methylation is a Significant Predictor of Mortality Risk in Framingham Heart Study.
Philibert RA, Dogan MV, Mills JA, Long JD.
J Insur Med. 2019;48(1):79-89. doi: 10.17849/insm-48-1-1-11.1. Epub 2019 Oct 16.
Philibert RA, Dogan MV, Mills JA, Long JD. AHRR Methylation is a Significant Predictor of Mortality Risk in Framingham Heart Study. J Insur Med. 2019;48(1):79-89. doi: 10.17849/insm-48-1-1-11.1. Epub 2019 Oct 16. PubMed PMID: 31618096.
Andersen AM, Ryan PT, Gibbons FX, Simons RL, Long JD, Philibert RA. A Droplet Digital PCR Assay for Smoking Predicts All-Cause Mortality. J Insur Med. 2018;47(4):220-229. doi: 10.17849/insm-47-4-1-10.1. Epub 2019 Jan 31. PubMed PMID: 30702368.
Mills JA, Beach SRH, Dogan M, Simons RL, Gibbons FX, Long JD, Philibert R. A Direct Comparison of the Relationship of Epigenetic Aging and Epigenetic Substance Consumption Markers to Mortality in the Framingham Heart Study. Genes (Basel). 2019 Jan 15;10(1). pii: E51. doi: 10.3390/genes10010051. PubMed PMID: 30650672; PubMed Central PMCID: PMC6356614.